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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 374 160

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 465 repositories
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 29 9 270 8 Updated Feb 6, 2026
  • npc_sessions Public

    Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

    AllenInstitute/npc_sessions’s past year of commit activity
    Python 2 1 54 (3 issues need help) 0 Updated Feb 6, 2026
  • np_codeocean Public

    Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean)

    AllenInstitute/np_codeocean’s past year of commit activity
    Python 0 2 0 0 Updated Feb 6, 2026
  • acq4 Public Forked from acq4/acq4

    Data acquisition for patch clamp ephys / optogenetics / imaging experiments

    AllenInstitute/acq4’s past year of commit activity
    Python 1 MIT 53 0 2 Updated Feb 6, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 1 3 0 Updated Feb 6, 2026
  • np_notebooks Public
    AllenInstitute/np_notebooks’s past year of commit activity
    Jupyter Notebook 0 3 0 0 Updated Feb 5, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 7 MIT 0 0 1 Updated Feb 5, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 15 BSD-3-Clause 4 88 4 Updated Feb 5, 2026
  • BG_Consensus_Taxonomy Public
    AllenInstitute/BG_Consensus_Taxonomy’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 5, 2026
  • BG_CERP Public

    Repository containing code used in the BG CERP study

    AllenInstitute/BG_CERP’s past year of commit activity
    Python 0 0 0 0 Updated Feb 5, 2026
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